Computational Challenges in Bioinformatics Week 03: alignment

Week 03: alignment

Superimposing the symbols of one string over those of another (with gap symbols inserted into the strings) to represent insertions, deletions, and substitutions between the strings.

Arne Claeys

Carlos Josué Jordán Martínez

Lippeveld Maxim

Pivetta Jonah

Scheers Louis

Van den Eynde Simon

			Title	Class progress
			Counting point mutations
			Transitions and transversions
			Consensus and profile
			Creating a distance matrix
			Pairwise global alignment
			Suboptimal local alignment
			Global multiple alignment
			Edit distance
			Edit distance alignment
			Counting optimal alignments
			Global alignment with scoring matrix
			Global alignment with constant gap penalty
			Local alignment with scoring matrix
			Maximizing the gap symbols of an optimal alignment
			Multiple alignment
			Global alignment with scoring matrix and affine gap penalty
			Overlap alignment
			Semiglobal alignment
			Local alignment with scoring matrix and affine gap penalty
			Isolating symbols in alignments