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- Week 03: alignment
- Counting point mutations
- Transitions and transversions
- Consensus and profile
- Creating a distance matrix
- Pairwise global alignment
- Suboptimal local alignment
- Global multiple alignment
- Edit distance
- Edit distance alignment
- Counting optimal alignments
- Global alignment with scoring matrix
- Global alignment with constant gap penalty
- Local alignment with scoring matrix
- Maximizing the gap symbols of an optimal alignment
- Multiple alignment
- Global alignment with scoring matrix and affine gap penalty
- Overlap alignment
- Semiglobal alignment
- Local alignment with scoring matrix and affine gap penalty
- Isolating symbols in alignments