Computationele Biologie


Chapter 04: How do we sequence antibiotics?

  • handboek
  • videolessen
  • oefeningen waarvan computationele complexiteit zal gebenchmarked worden
    • Number of peptides with a given total mass (benchmark)
    • Leaderboard cyclopeptide sequencing (benchmark)
Title Class progress
Translate an RNA string into an amino acid string
Find DNA substrings encoding an amino acid string
Theoretical spectrum of a linear peptide
Theoretical spectrum of a cyclic peptide
Number of peptides with a given total mass
Find a cyclic peptide with a given ideal spectrum
Score a cyclic peptide against a spectrum
Score a linear peptide against a spectrum
Trim a peptide leaderboard
Leaderboard cyclopeptide sequencing
Convolution of a spectrum
Convolution cyclopeptide sequencing
Turnpike problem