Computational Challenges in Bioinformatics
Superimposing the symbols of one string over those of another (with gap symbols inserted into the strings) to represent insertions, deletions, and substitutions between the strings.
| Titel | Voortgang groep | |||
|---|---|---|---|---|
| Counting point mutations | ||||
| Transitions and transversions | ||||
| Consensus and profile | ||||
| Creating a distance matrix | ||||
| Pairwise global alignment | ||||
| Suboptimal local alignment | ||||
| Global multiple alignment | ||||
| Edit distance | ||||
| Edit distance alignment | ||||
| Counting optimal alignments | ||||
| Global alignment with scoring matrix | ||||
| Global alignment with constant gap penalty | ||||
| Local alignment with scoring matrix | ||||
| Maximizing the gap symbols of an optimal alignment | ||||
| Multiple alignment | ||||
| Global alignment with scoring matrix and affine gap penalty | ||||
| Overlap alignment | ||||
| Semiglobal alignment | ||||
| Local alignment with scoring matrix and affine gap penalty | ||||
| Isolating symbols in alignments |